Transcription Factor Encyclopedia Website
The Transcription Factor Encyclopedia (TFe), is a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on …
The Transcription Factor Encyclopedia
Dimas Yusuf, Stefanie L Butland, Magdalena I Swanson, Eugene Bolotin, Amy Ticoll, Warren A Cheung, Xiao Yu Cindy Zhang, Christopher TD Dickman, …
Patricia Baird Prize TFe Presentation
Select slides from a presentation I gave on the Transcription Factor Encyclopedia project to the Medical Genetics community at the University of …
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Elodie Portales-Casamar, Supat Thongjuea, Andrew T Kwon, David Arenillas, Xiaobei Zhao, Eivind Valen, Dimas Yusuf, Boris Lenhard, Wyeth W Wasserman, and Albin …
PDF Creator
An app, written in Perl and PHP, that is able to retrieve a set of images and text from a database and …
Gene characterization index: assessing the depth of gene annotation
Danielle Kemmer, Raf M Podowski, Dimas Yusuf, Jochen Brumm, Warren Cheung, Claes Wahlestedt, Boris Lenhard, and Wyeth W Wasserman. Gene characterization index: …
Gene Characterization Project
Created a web app with Perl that allows researchers to look up their gene of interest and receive a score that tries …
Transcription Factor DNA Binding Simulator
An interactive visualizer made in Adobe Flash and Perl for a research project that aims to simulate the interaction of transcription factors …
TFBS Viewer
A software suite that captures and presents data on the binding strength of various transcription factors with random sequences of DNA.
The Gene Set Builder: collation, curation, and distribution of sets of genes
Dimas Yusuf, Jonathan S Lim, and Wyeth W Wasserman. The Gene Set Builder: collation, curation, and distribution of sets of genes. BMC …